SelectFromInternalDB: Return a an internal DB using the provided search string

Description Usage Arguments

View source: R/GMT.R

Description

Return a an internal DB using the provided search string

Usage

1
2
SelectFromInternalDB(SearchString, BDName = "MsigDB", Version = NULL,
  Mode = "ANY")

Arguments

SearchString

string vector, the keywords to search

BDName

string, scalar. The internal DB to use, can be one of the following

  • 'MsigDB': Molecular signature database (http://software.broadinstitute.org/gsea/msigdb)

  • 'ACSN_Global': ACSN global map (https://acsn.curie.fr)

  • 'ACSN_Apoptosis': ACSN Apoptosis map (https://acsn.curie.fr)

  • 'ACSN_CellCycle': ACSN Cell Cycle map (https://acsn.curie.fr)

  • 'ACSN_DNARepair': ACSN DNA repair map (https://acsn.curie.fr)

  • 'ACSN_EMT': ACSN EMT map (https://acsn.curie.fr)

  • 'ACSN_Survival': ACSN Survival map (https://acsn.curie.fr)

Version

string scalar, the version of the internal DB to use. If NULL, the most recent version availble in the package will be used

Mode

string scalar, the search mode for the keywords. It can be "ALL" (genesets with all the keywords will be returned) or "ANY" (genesets with at at least one keyword will be returned)


Albluca/rRoma documentation built on May 5, 2019, 1:35 p.m.