SelectFromInternalDB: Return a an internal DB using the provided search string

In Albluca/rRoma: An r implementation of ROMA

Description

Return a an internal DB using the provided search string

Usage

SelectFromInternalDB(SearchString, BDName = "MsigDB", Version = NULL,
  Mode = "ANY")

Arguments

SearchString	string vector, the keywords to search
BDName	string, scalar. The internal DB to use, can be one of the following 'MsigDB': Molecular signature database (http://software.broadinstitute.org/gsea/msigdb) 'ACSN_Global': ACSN global map (https://acsn.curie.fr) 'ACSN_Apoptosis': ACSN Apoptosis map (https://acsn.curie.fr) 'ACSN_CellCycle': ACSN Cell Cycle map (https://acsn.curie.fr) 'ACSN_DNARepair': ACSN DNA repair map (https://acsn.curie.fr) 'ACSN_EMT': ACSN EMT map (https://acsn.curie.fr) 'ACSN_Survival': ACSN Survival map (https://acsn.curie.fr)
Version	string scalar, the version of the internal DB to use. If NULL, the most recent version availble in the package will be used
Mode	string scalar, the search mode for the keywords. It can be "ALL" (genesets with all the keywords will be returned) or "ANY" (genesets with at at least one keyword will be returned)

Albluca/rRoma documentation built on May 5, 2019, 1:35 p.m.