API for AlexJanse/cMut
Identify Clustered Single Nucleotide Mutations and Link Them to Mutational Patterns
| Global functions | |
|---|---|
| addClusterTableComment | Man page Source code |
| addDistance | Man page Source code |
| addIdentTableComment | Man page Source code |
| addLinkPatterns | Man page Source code |
| addShuffleMutationComment | Man page Source code |
| callLinkPatterns | Man page Source code |
| callSearchclusterPatterns | Man page Source code |
| checkLinkPatternsParameters | Man page Source code |
| checkParametersShuffleMutations | Man page Source code |
| compare | Man page Source code |
| compareContext | Man page Source code |
| compareNucs | Man page Source code |
| convertFactor | Man page Source code |
| createGroupTable | Man page Source code |
| createIdentTable | Man page Source code |
| createRandomMutations | Man page Source code |
| createRandomTable | Man page Source code |
| createShuffleTable | Man page Source code |
| createSummaryPatterns | Man page Source code |
| dnaAlphabet | Man page |
| formatClusterMutations | Man page Source code |
| fuseSurroundings | Man page Source code |
| getAlphaMatches | Man page Source code |
| getClusterId | Man page Source code |
| getClusterType | Man page Source code |
| getNnuc | Man page Source code |
| getPatternIntersect | Man page Source code |
| getRef | Man page Source code |
| getRefData | Man page Source code |
| getRevComTable | Man page Source code |
| getReverseComplement | Man page Source code |
| getSearchPatterns | Man page Source code |
| getSummaryPatterns | Man page Source code |
| groupClusters | Man page Source code |
| identifyClusters | Man page Source code |
| linkPatterns | Man page Source code |
| mutationPatterns | Man page |
| nucToSymbol | Man page Source code |
| searchClusterPatterns | Man page Source code |
| setdiff.data.frame | Man page Source code |
| shuffleMutations | Man page Source code |
| shuffleParallel | Man page Source code |
| summarizeBootstrap | Man page Source code |
| testDataSet | Man page |
