API for AlexanderKirchmair/datamisc
Various functions for data handling

Global functions
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.getLayout	Source code
.recodeCoxdata	Source code
COX	Man page Source code
KM	Man page Source code
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add_level	Man page Source code
baseext	Man page Source code
body	Man page Source code
ce	Man page Source code
cjoin	Man page Source code
clusterData	Man page Source code
col2rownames	Man page Source code
collapse	Man page
colorcat	Man page Source code
compareDF	Man page Source code
convertGeneIDs	Man page Source code
convertGeneSets	Man page Source code
convertGeneSpecies	Man page Source code
correl	Man page Source code
coxselectFUN	Source code
coxtable	Source code
cutstr	Man page Source code
cxheatmap	Man page Source code
dbugapply	Man page Source code
dedupl	Man page Source code
df2graph	Source code
diffuse	Source code
download	Man page Source code
edgeData	Source code
elasticCOX	Source code
expand	Man page
find_markers	Man page Source code
fp	Man page Source code
genPalettes	Man page Source code
getBiomaRt	Man page Source code
getCXanno	Source code
getColorScale	Source code
getColors	Man page Source code
getGEOdata	Man page Source code
getGOgenes	Man page Source code
getLimits	Source code
getMSigDB	Man page Source code
getMetabolicAtlas	Man page Source code
getMitoCarta	Man page Source code
getPaletteer	Man page Source code
getRanks	Man page
get_feature_ranks	Man page
get_seu_dataset	Man page Source code
get_top_markers	Man page Source code
getallFunctions	Source code
gg_getGeoms	Source code
gg_getLimits	Source code
ggbar	Man page Source code
ggdesign	Man page Source code
ggdesign2	Source code
ggheatmap	Source code
ggpca	Man page Source code
ggpdf	Man page Source code
ggplotForest	Source code
ggplotSurv	Source code
ggpng	Man page Source code
ggseabar	Man page Source code
ggstat	Man page Source code
ggtopfeatures	Man page Source code Source code
ggvolcano	Man page Source code
gradient	Man page Source code
greps	Source code
gseaplot	Man page Source code
head2	Man page Source code
intercalate	Man page Source code
intersection	Man page Source code
layout_with_ggrepel	Source code
lcc	Source code
leafs	Source code
lgrep	Man page Source code
listpipe	Man page Source code
make_filenames	Man page Source code
matScale	Man page Source code
mkdir	Man page Source code
na_skip	Man page Source code
naf	Man page Source code
napply	Man page Source code
nar	Man page
nat	Man page Source code
nf_preprocessing	Source code
nf_summary	Man page
nf_tximport	Man page Source code
nf_versions	Man page Source code
node2edge	Source code
nodeData	Source code
padjust	Man page Source code
partition	Man page Source code
pickColors	Man page Source code
pval_format	Man page Source code
qapply	Man page Source code
quo_class	Man page Source code
rangescale	Man page Source code
rdataframe	Man page Source code
readGMT	Man page Source code
readGTF	Man page Source code
readTables	Man page Source code
results	Source code Source code
results.coxph	Source code
results.list	Source code
results.survfit	Source code Source code
reverse_directions	Source code
rgenes	Man page Source code
rgraph	Source code
rjoin	Man page Source code
rlist	Man page Source code
rmat	Man page Source code
rounddown	Man page Source code
roundup	Man page Source code
rownames2col	Man page Source code
runDESeq2	Man page Source code
runGSEA	Man page
runGSVA	Man page
runLIMMA	Man page Source code
runORA	Man page
runTEST	Man page
runfGSEA	Man page
saveplot	Man page Source code
selectCox	Source code
setColnames	Man page Source code
setRownames	Man page Source code
seu_dotplot	Man page Source code
seu_downsample	Man page Source code
seu_umap	Man page Source code
showColors	Man page Source code
size	Man page Source code
sourceRMD	Man page Source code
sourcelib	Man page Source code
sources	Source code
stratify	Man page Source code
stratify_var	Man page Source code
subInf	Man page Source code
subset.igraph	Source code
summarise_cols	Man page Source code
summarise_rows	Man page Source code
targets	Source code
theme_basic	Man page Source code
theme_dev	Man page Source code
uniqueSets	Man page Source code
useFunctions	Source code
vars.coxph	Source code
versionInfo	Man page Source code
writeGMT	Man page Source code
writeTables	Man page Source code