Files in AlexanderKirchmair/datamisc

Various functions for data handling

LICENSE.md R/color_functions.R R/data_functions.R R/gene_functions.R R/ggheatmap.R R/ggvolcano.R R/graph_functions.R R/imports.R R/listpipes.R R/meta_functions.R R/plotting_functions.R R/rnaseq_functions.R R/scrnaseq_functions.R R/survival_functions.R R/utils-pipe.R README.Rmd README.md man/COX.Rd man/KM.Rd man/add_level.Rd man/baseext.Rd man/body.Rd man/ce.Rd man/cjoin.Rd man/clusterData.Rd man/col2rownames.Rd man/collapse.Rd man/colorcat.Rd man/compareDF.Rd man/convertGeneIDs.Rd man/convertGeneSets.Rd man/convertGeneSpecies.Rd man/correl.Rd man/cutstr.Rd man/cxheatmap.Rd man/dbugapply.Rd man/dedupl.Rd man/download.Rd man/expand.Rd man/find_markers.Rd man/fp.Rd man/genPalettes.Rd man/getBiomaRt.Rd man/getColors.Rd man/getGEOdata.Rd man/getGOgenes.Rd man/getMSigDB.Rd man/getMetabolicAtlas.Rd man/getMitoCarta.Rd man/getPaletteer.Rd man/getRanks.Rd man/get_feature_ranks.Rd man/get_seu_dataset.Rd man/get_top_markers.Rd man/ggbar.Rd man/ggdesign.Rd man/ggpca.Rd man/ggpdf.Rd man/ggpng.Rd man/ggseabar.Rd man/ggstat.Rd man/ggtopfeatures.Rd man/ggvolcano.Rd man/gradient.Rd man/grapes-L-greater-than-grapes.Rd man/grapes-P-greater-than-grapes.Rd man/grapes-Q-greater-than-grapes.Rd man/grapes-S-greater-than-grapes.Rd man/grapes-less-than-L-greater-than-grapes.Rd man/grapes-less-than-P-greater-than-grapes.Rd man/grapes-less-than-Q-greater-than-grapes.Rd man/grapes-less-than-S-greater-than-grapes.Rd man/gseaplot.Rd man/head2.Rd man/intercalate.Rd man/intersection.Rd man/lgrep.Rd man/listpipe.Rd man/make_filenames.Rd man/matScale.Rd man/mkdir.Rd man/na_skip.Rd man/naf.Rd man/napply.Rd man/nar.Rd man/nat.Rd man/nf_summary.Rd man/nf_tximport.Rd man/nf_versions.Rd man/padjust.Rd man/partition.Rd man/pickColors.Rd man/pipe.Rd man/pval_format.Rd man/qapply.Rd man/quo_class.Rd man/rangescale.Rd man/rdataframe.Rd man/readGMT.Rd man/readGTF.Rd man/readTables.Rd man/rgenes.Rd man/rjoin.Rd man/rlist.Rd man/rmat.Rd man/rounddown.Rd man/roundup.Rd man/rownames2col.Rd man/runDESeq2.Rd man/runGSEA.Rd man/runGSVA.Rd man/runLIMMA.Rd man/runORA.Rd man/runTEST.Rd man/runfGSEA.Rd man/saveplot.Rd man/setColnames.Rd man/setRownames.Rd man/seu_dotplot.Rd man/seu_downsample.Rd man/seu_umap.Rd man/showColors.Rd man/size.Rd man/sourceRMD.Rd man/sourcelib.Rd man/stratify.Rd man/stratify_var.Rd man/subInf.Rd man/summarise_cols.Rd man/summarise_rows.Rd man/theme_basic.Rd man/theme_dev.Rd man/uniqueSets.Rd man/versionInfo.Rd man/writeGMT.Rd man/writeTables.Rd package_dev.Rmd tests/testthat.R tests/testthat/test-color_functions.R tests/testthat/test-data_functions.R tests/testthat/test-ggvolcano.R tests/testthat/test-listpipes.R tests/testthat/test-plotting_functions.R tests/testthat/test-rnaseq_functions.R