write_h5_list: Write an h5_list, as created by rhdf5::h5dump(), to an .h5...

In AllenInstitute/BarMixer: Hashed scRNA-seq demultiplexing for .h5 files

Description

Write an h5_list, as created by rhdf5::h5dump(), to an .h5 file

Usage

write_h5_list(
  h5_list,
  h5_file,
  overwrite = FALSE,
  addon = FALSE,
  h5_handle = NULL,
  h5_target = "/",
  h5_attributes = NULL,
  library_ids = NULL
)

Arguments

h5_list	a list object, e.g. a list created by rhdf5::h5dump()
h5_file	a character object specifying the location of a .h5 file to write to.
overwrite	a logical value specifying whether or not to overwrite an existing .h5 file. Default is FALSE.
h5_handle	an existing h5_handle created by H5Fopen(). Used for recursion. The default (NULL) should usually be used.
h5_target	a base location within the HDF5 file to write to. Mainly used for recursion. The default ("/") should usually be used.
h5_attributes	a list of attributes to add to an .h5 file to try to imitate 10x Genomics outputs. If NULL (default), will be skipped. "tenx" uses in-built data from 'h5_attr_list()'.
library_ids	a character vector of library ids to add to attributes. Only used if h5_attributes != NULL. Default is NULL.

Value

Writes a file; no return to R.

AllenInstitute/BarMixer documentation built on Dec. 17, 2021, 8:42 a.m.