Man pages for AmundsenJunior/pfsrsdk
Functions for interacting with Platform for Science APIs
| apiGET | apiGET - Do a GET from the PFS API. |
| apiPOST | apiPOST - Do a POST to the PFS API. |
| apiPUT | apiPUT - Do a PUT to the PFS API. |
| attachFile | attachFile - Attaches a file to an entity or file attribute. |
| attributeCleanName | attributeCleanName - converts names to uppercase and replaces... |
| authBasic | authBasic - Authenticates against the ODATA REST API using... |
| buildUrl | buildUrl - build URL for call to Core ODATA API. |
| case | case - Performs a vectorized IF |
| coreAPI | coreAPI - Creates a object of class coreAPI that contains... |
| createEntity | createEntity - Create a new instance of a entity. Used for... |
| createExperiment | createExperiment - Create a new instance of an experiment. |
| createExperimentContainer | createExperimentContainer- Creates a new experiment container... |
| createExperimentSample | createExperimentSample - Create a new experiment sample from... |
| createSampleLot | createSampleLot - Creates a lot of a sample. |
| experimentPublish | experimentPublish Publishes an experiment. |
| experimentUnpublish | experimentUnpublish Unpublishes an experiment. |
| getAccountInfoValue | getAccountInfoValue - read a configuration value from a data... |
| getAttachedAttributeFile | getAttachedAttributeFile - Gets file attached to an attribute... |
| getAttributesColumnHeaders | getAttributesColumnHeaders - Gets the attribute column header... |
| getCellContents | getCellContents - Gets information about a single container... |
| getContainerCellIds | getContainerCellIds - Gets cell ids for a container |
| getContainerContents | getContainerContents - Gets container contents. |
| getEntityAssociations | 'getEntityAssociations' Get associations for an entity |
| getEntityAttributeMetadata | getEntityAttributeMetadata - Gets attribute metadata for a... |
| getEntityByBarcode | getEntityByBarcode - Get an entity by barcode from PFS using... |
| getEntityByName | getEntityByName - Get an entity by name from the Core LIMS... |
| getEntityLocation | getEntityLocation - Get location for an entity by barcode... |
| getEntityMetadata | getEntityMetadata - Get entity metadata. |
| getEntityProject | getEntityProject - Get project(s) for an entity by barcode... |
| getExperimentContainerCellIds | getExperimentContainerCellIds - Gets cell ids for a container... |
| getExperimentContainerContents | getExperimentContainerContents - Gets experiment container... |
| getExperimentContainers | getExperimentContainers - Gets experiment containers from... |
| getExperimentContainersAndExperimentSamples | getExperimentContainersAndExperimentSamples - Gets the... |
| getExperimentSampleAssayData | getExperimentSampleAssayData - Gets assay data for an... |
| getExperimentSampleIntermediateData | getExperimentSampleIntermediateData - Gets intermediate data... |
| getExperimentSamples | getExperimentSamples - Gets experiment sample barcodes from... |
| getExperimentSamplesAssayFileData | getExperimentSamplesAssayFileData - Gets file attached as... |
| getExperimentSamplesRawData | getExperimentSamplesRawData - Gets raw data for an experiment... |
| getExperimentSamplesWithSampleLots | getExperimentSamplesWithSampleLots - Gets sample lots... |
| getExperimentWellContents | getExperimentWellContents - Gets content information of a... |
| getSemVer | getSemVer - Retrieves the PFS SemVer and creates a warning... |
| getUserProjects | getUserProjects - Gets metadata of projects accessible to the... |
| getWellContents | getWellContents - Gets content information of a single... |
| isExperimentPublished | isExperimentPublished gets a boolean indicating if an... |
| loadXmlConfigFile | loadXMLconfigFile- Loads an XML config file |
| logOut | logOut -Log user out of the LIMS. |
| odataCleanName | odataCleanName - converts names to ODATA compliant version.... |
| pfsrsdk-deprecated | Deprecated functions in package 'pfsrsdk'. |
| setCellContents | setCellContents - Puts a sample lot in a container Cell. |
| setExperimentSampleAssayFileData | setExperimentSampleAssayFileData - Puts file attached as... |
| setWellContents | setWellContents - Puts a sample lot in a container well. |
| updateEntityAssociations | 'updateEntityAssociations' Update entity assoications |
| updateEntityAttributes | 'updateEntityAttributes' Update entity assoications. |
| updateEntityLocation | 'updateEntityLocation'- Update entity location |
| updateEntityProject | 'updateEntityProject'- Update entity project association |
| updateExperimentSampleData | updateExperimentSampleData - Update experiment sample assay... |
| updateExperimentSampleRawData | updateExperimentSampleRawData - Update experiment sample raw... |
| updateMetadata | 'updateMetadata' g Updates cached metadata so metadata is up... |
