Man pages for Anderson-Lab/ComplementaryDomainPrioritization
ComplementaryDomainPrioritization and Filtering
| download.example.data | Downloads example data files for package demonstration. |
| fold.change.filter | Fold change filter |
| get.all.genes.kegg | Downloading gene ids from all Kegg Pathways |
| get.all.genes.wiki | Downloading all genes in all WikiPathways pathways |
| get.genes.in.data | Filter for only those genes in the data. |
| get.genes.kegg | Downloading Kegg Pathways to find the gene ids |
| get.genes.tf | Finds the genes ids from the Transcription Factor Targets... |
| get.genes.wiki | Downloading WikiPathways to access gene ids |
| list.filter | Returns a filtered dataset |
| list.filter.inxs | Returns the gene.ixs for filtering |
| load.gene.data | Loading a correctly formatted gene file. |
| load.protein.data | Loading a correctly formatted protein file. |
| load.WebGestalt | Loading the pathway data from WebGestalt output. |
| overall.mean.filter | Overall mean filter |
| overall.var.filter | Overall variance filter |
| random.filter | Random filter |
