load.WebGestalt: Loading the pathway data from WebGestalt output.
In Anderson-Lab/ComplementaryDomainPrioritization: ComplementaryDomainPrioritization and Filtering
Description
Usage
Arguments
Value
Examples
Description
Returns an array of pathways.
For data format instructions see https://github.com/Anderson-Lab/ComplementaryDomainPrioritization/wiki.
Usage
1
load.WebGestalt(file, db)
Arguments
file
A string pointing to the location of the data file
db
Wiki, Kegg, or TF
Value
a list containing the extracted pathways from WebGestalt output.
Examples
1
2
3
4
download.example.data()
pathways = load.WebGestalt("Marra_0_tf_protein_enrichment.tsv",'TF')
pathways = load.WebGestalt("Marra_0_wiki_protein_enrichment.tsv",'Wiki')
pathways = load.WebGestalt("Marra_0_kegg_protein_enrichment.tsv",'Kegg')
Anderson-Lab/ComplementaryDomainPrioritization documentation built on May 5, 2019, 5:59 a.m.
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Description Usage Arguments Value Examples
Description
Returns an array of pathways. For data format instructions see https://github.com/Anderson-Lab/ComplementaryDomainPrioritization/wiki.
Usage
1 | load.WebGestalt(file, db)
|
Arguments
file |
A string pointing to the location of the data file |
db |
Wiki, Kegg, or TF |
Value
a list containing the extracted pathways from WebGestalt output.
Examples
1 2 3 4 | download.example.data()
pathways = load.WebGestalt("Marra_0_tf_protein_enrichment.tsv",'TF')
pathways = load.WebGestalt("Marra_0_wiki_protein_enrichment.tsv",'Wiki')
pathways = load.WebGestalt("Marra_0_kegg_protein_enrichment.tsv",'Kegg')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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