get.genes.wiki: Downloading WikiPathways to access gene ids
In Anderson-Lab/ComplementaryDomainPrioritization: ComplementaryDomainPrioritization and Filtering
Description
Usage
Arguments
Value
Examples
Description
Returns the gene ids associated with select WikiPathways
For more information on WikiPathways see http://webservice.wikipathways.org/ and
http://www.wikipathways.org/index.php/Help:WikiPathways_Webservice/API
Usage
1
2
get.genes.wiki(webg.pathways, url = "http://webservice.wikipathways.org",
species = "Homo sapiens")
Arguments
webg.pathways
Dataframe where the second column contains the pathway ids
url
WikiPathways base URL for webservice calls.
species
Species for pathway analysis
Value
a dataframe
Examples
1
2
3
download.example.data()
webg.pathways = load.WebGestalt("Marra_0_wiki_protein_enrichment.tsv",'Wiki')
gene.ids = get.genes.wiki(webg.pathways)
Anderson-Lab/ComplementaryDomainPrioritization documentation built on May 5, 2019, 5:59 a.m.
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Description Usage Arguments Value Examples
Description
Returns the gene ids associated with select WikiPathways For more information on WikiPathways see http://webservice.wikipathways.org/ and http://www.wikipathways.org/index.php/Help:WikiPathways_Webservice/API
Usage
1 2 | get.genes.wiki(webg.pathways, url = "http://webservice.wikipathways.org",
species = "Homo sapiens")
|
Arguments
webg.pathways |
Dataframe where the second column contains the pathway ids |
url |
WikiPathways base URL for webservice calls. |
species |
Species for pathway analysis |
Value
a dataframe
Examples
1 2 3 | download.example.data()
webg.pathways = load.WebGestalt("Marra_0_wiki_protein_enrichment.tsv",'Wiki')
gene.ids = get.genes.wiki(webg.pathways)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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