get.genes.wiki: Downloading WikiPathways to access gene ids

Description Usage Arguments Value Examples

View source: R/get.genes.R

Description

Returns the gene ids associated with select WikiPathways For more information on WikiPathways see http://webservice.wikipathways.org/ and http://www.wikipathways.org/index.php/Help:WikiPathways_Webservice/API

Usage

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get.genes.wiki(webg.pathways, url = "http://webservice.wikipathways.org",
  species = "Homo sapiens")

Arguments

webg.pathways

Dataframe where the second column contains the pathway ids

url

WikiPathways base URL for webservice calls.

species

Species for pathway analysis

Value

a dataframe

Examples

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download.example.data()
webg.pathways = load.WebGestalt("Marra_0_wiki_protein_enrichment.tsv",'Wiki')
gene.ids = get.genes.wiki(webg.pathways)

Anderson-Lab/ComplementaryDomainPrioritization documentation built on May 5, 2019, 5:59 a.m.