list.filter.inxs: Returns the gene.ixs for filtering

In Anderson-Lab/ComplementaryDomainPrioritization: ComplementaryDomainPrioritization and Filtering

Description

A helper function that filters using a list of gene IDs and returns an array of indices of the genes that passed the filter.

Usage

list.filter.inxs(data, gene.ids)

Arguments

data	- transposed gene data
gene.ids	- result of get.genes.*(...)

Value

an array of inxs

Examples

download.example.data()
webg.pathways = load.WebGestalt("Marra_0_wiki_protein_enrichment.tsv",'Wiki')
gene.ids = get.genes.wiki(webg.pathways)
Cattaneo.rna = load.gene.data("Cattaneo_array.csv",5)
gene.ixs = list.filter.inxs(Cattaneo.rna$transposed.data,gene.ids)

Anderson-Lab/ComplementaryDomainPrioritization documentation built on May 5, 2019, 5:59 a.m.