get.genes.tf: Finds the genes ids from the Transcription Factor Targets...
In Anderson-Lab/ComplementaryDomainPrioritization: ComplementaryDomainPrioritization and Filtering
Description
Usage
Arguments
Value
Examples
Description
Returns ...
Usage
1
2
get.genes.tf(webg.pathways, db = system.file("extdata",
"c3.tft.v4.0.entrez.gmt", package = "ComplementaryDomainPrioritization"))
Arguments
webg.pathways
dataframe where the second column contains the pathway ids
db
TF database to use
Value
an array of gene ids
Examples
1
2
3
download.example.data()
webg.pathways = load.WebGestalt("Marra_0_tf_protein_enrichment.tsv",'TF')
gene.ids = get.genes.tf(webg.pathways)
Anderson-Lab/ComplementaryDomainPrioritization documentation built on May 5, 2019, 5:59 a.m.
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Description Usage Arguments Value Examples
Description
Returns ...
Usage
1 2 | get.genes.tf(webg.pathways, db = system.file("extdata",
"c3.tft.v4.0.entrez.gmt", package = "ComplementaryDomainPrioritization"))
|
Arguments
webg.pathways |
dataframe where the second column contains the pathway ids |
db |
TF database to use |
Value
an array of gene ids
Examples
1 2 3 | download.example.data()
webg.pathways = load.WebGestalt("Marra_0_tf_protein_enrichment.tsv",'TF')
gene.ids = get.genes.tf(webg.pathways)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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