get.genes.tf: Finds the genes ids from the Transcription Factor Targets...

Description Usage Arguments Value Examples

View source: R/get.genes.R

Description

Returns ...

Usage

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get.genes.tf(webg.pathways, db = system.file("extdata",
  "c3.tft.v4.0.entrez.gmt", package = "ComplementaryDomainPrioritization"))

Arguments

webg.pathways

dataframe where the second column contains the pathway ids

db

TF database to use

Value

an array of gene ids

Examples

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download.example.data()
webg.pathways = load.WebGestalt("Marra_0_tf_protein_enrichment.tsv",'TF')
gene.ids = get.genes.tf(webg.pathways)

Anderson-Lab/ComplementaryDomainPrioritization documentation built on May 5, 2019, 5:59 a.m.