get.all.genes.kegg: Downloading gene ids from all Kegg Pathways
In Anderson-Lab/ComplementaryDomainPrioritization: ComplementaryDomainPrioritization and Filtering
Description
Usage
Arguments
Examples
Description
Writes the gene ids to a file
Usage
1
2
get.all.genes.kegg(sleep = 10, species = "hsa", start = 1,
file = "kegg.genes.csv")
Arguments
sleep
Number of seconds to sleep between Kegg requests
species
Species identifier for Kegg. Default is hsa.
start
Index of pathway to start processing. Only necessary because of frequent Kegg timeouts.
file
File to read gene ids from and
Examples
1
gene.ids = get.all.genes.kegg(start=1)
Anderson-Lab/ComplementaryDomainPrioritization documentation built on May 5, 2019, 5:59 a.m.
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Description Usage Arguments Examples
Description
Writes the gene ids to a file
Usage
1 2 | get.all.genes.kegg(sleep = 10, species = "hsa", start = 1,
file = "kegg.genes.csv")
|
Arguments
sleep |
Number of seconds to sleep between Kegg requests |
species |
Species identifier for Kegg. Default is hsa. |
start |
Index of pathway to start processing. Only necessary because of frequent Kegg timeouts. |
file |
File to read gene ids from and |
Examples
1 | gene.ids = get.all.genes.kegg(start=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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