Man pages for AnnaLaddach/TrajectoryGeometry
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns

analyseBranchPointAnalyse branch point.
analyseSingleCellTrajectoryAnalyse a single cell trajectory.
chol_answerschol_answers
chol_attributeschol_attributes
chol_branch_point_resultschol_branch_point_results
chol_pseudo_timechol_pseudo_time
chol_pseudo_time_normalisedchol_pseudo_time_normalised
circleOnTheUnitSphereCircle on the unit sphere
crooked_pathCrooked path
crooked_path_centerCrooked path center
crooked_path_projectionCrooked path projection
crooked_path_radiusCrooked path radius
distanceBetweenTrajectoriesGet distances between trajectories.
findSphereClusterCenterFind a center for points on the unit sphere
findSphericalDistanceFind the spherical distance from a given point to a set of...
generateRandomPathsProduce random paths modeled on a given path
generateRandomUnitVectorGenerate random unit vector.
getDistanceDataForPathsProduce distance statistics for random paths
getSphericalDataThis is a simplified wrapper for pathToSphericalData
getStepLengthsFind the step lengths:
hep_answershep_answers
hep_attributeshep_attributes
hep_pseudo_timehep_pseudo_time
hep_pseudo_time_normalisedhep_pseudo_time_normalised
orthonormalBasisFind an orthonormal basis in dimension 3
oscillationOscillation
pathProgressionMeasure a path's progression
pathToSphericalDataFind the spherical data for a given path
plotPathProjectionCenterAndCirclePlot a path, its projection, its center and its circle
projectPathToSphereProject a path onto the unit sphere
samplePathSample a path from single cell data
single_cell_matrixsingle_cell_matrix
straight_pathStraight path
straight_path_centerStraight path center
straight_path_projectionStraight path projection
straight_path_radiusStraight path radius
testPathForDirectionalityTest a path for directionality
visualiseBranchPointStatsVisualise Branch Point Stats
visualiseTrajectoryStatsVisualise Trajectory Stats
AnnaLaddach/TrajectoryGeometry documentation built on Jan. 28, 2021, 10:41 a.m.