chol_pseudo_time_normalised: chol_pseudo_time_normalised

In AnnaLaddach/TrajectoryGeometry: This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns

chol_pseudo_time_normalised

Description

A vector of pseudotime values, normalised to range from 0 to 100, for a trajectory describing the development of cholangiocytes from hepatoblasts. Pseudotime values have been inferred using the SlingShot package. The vector is named according to cell ID.

Usage

chol_pseudo_time_normalised

Format

A vector

A vector of pseudotime values, normalised to range from 0 to 100, for a trajectory describing the development of cholangiocytes from hepatoblasts. Pseudotime values have been inferred using the SlingShot package. The vector is named according to cell ID.

Source

Single-cell data has been obtained from GEO (GSE90047) and the script used for upstream processing is available at https://github.com/AnnaLaddach/TrajectoryGeometryData

AnnaLaddach/TrajectoryGeometry documentation built on Feb. 23, 2024, 2:24 p.m.