API for BIMSBbioinfo/ciRcus
Annotation, analysis and visualization of circRNA data
| Global functions | |
|---|---|
| .onLoad | Source code |
| AnnotateRanges | Man page Source code |
| MungeColumn | Man page Source code |
| ProcessLinear | Man page |
| annotPie | Man page |
| annotPie,RangedSummarizedExperiment-method | Man page |
| annotateCircs | Man page |
| annotateCircs,RangedSummarizedExperiment-method | Man page |
| annotateFlanks | Man page Source code |
| annotateHostGenes | Man page Source code |
| annotateJunctions | Man page Source code |
| bedTracks | Man page |
| bedTracks,RangedSummarizedExperiment-method | Man page |
| ciRcus | Man page |
| ciRcus-package | Man page |
| circLinRatio | Man page |
| circLinRatio,RangedSummarizedExperiment-method | Man page |
| ensg2name | Man page Source code |
| getIDs | Man page Source code |
| getStudiesList | Man page |
| gtf2sqlite | Man page Source code |
| histogram | Man page |
| histogram,RangedSummarizedExperiment-method | Man page |
| loadAnnotation | Man page |
| loadAnnotation,TxDb-method | Man page |
| loadAnnotation,character-method | Man page |
| qualFilter | Man page Source code |
| readCircs | Man page Source code |
| resTable | Man page |
| resTable,RangedSummarizedExperiment-method | Man page |
| summarizeCircs | Man page |
| summarizeCircs,character-method | Man page |
| summarizeCircs,data.frame-method | Man page |
| testCoordinateIndexing | Man page Source code |
| uniqReadsQC | Man page |
| uniqReadsQC,RangedSummarizedExperiment-method | Man page |
| writeBedTracks | Man page |
| writeBedTracks,GRangesList-method | Man page |
| writeBedTracks,RangedSummarizedExperiment-method | Man page |
