Man pages for BIMSBbioinfo/ciRcus
Annotation, analysis and visualization of circRNA data

annotateCircs-methodsLoad and annotate a list of circRNA candidates
annotateFlankstitle
annotateHostGenestitle
annotateJunctionstitle
AnnotateRangestitle
annotPie-methodsA piechart of gene features input circRNAs are spliced from
bedTracks-methodsbedTracks
circLinRatio-methodscircLinRatio
ciRcusciRcus: An R package for circRNAs munging
ensg2nametitle
getIDstitle
getStudiesListtitle
gtf2sqliteBuild and save a TxDb object containing gene annotation
histogram-methodshistogram
loadAnnotation-methodsLoad annotation and prepare a list of features for later
MungeColumnTitle
ProcessLinearTitle
qualFilterfilter find_circ.py-generated splice candidates
readCircsread a tabular circRNA candidate list
resTable-methodsresTable
summarizeCircs-methodsload circRNA detection output to a SummarizedExperiment...
testCoordinateIndexingtest if input and annotation have the same coordinate...
uniqReadsQC-methodsA scatterplot of total to unique reads supporting a...
writeBedTracks-methodswriteBedTracks
BIMSBbioinfo/ciRcus documentation built on Dec. 7, 2018, 1:07 p.m.