Man pages for BIMSBbioinfo/ciRcus
Annotation, analysis and visualization of circRNA data
| annotateCircs-methods | Load and annotate a list of circRNA candidates |
| annotateFlanks | title |
| annotateHostGenes | title |
| annotateJunctions | title |
| AnnotateRanges | title |
| annotPie-methods | A piechart of gene features input circRNAs are spliced from |
| bedTracks-methods | bedTracks |
| circLinRatio-methods | circLinRatio |
| ciRcus | ciRcus: An R package for circRNAs munging |
| ensg2name | title |
| getIDs | title |
| getStudiesList | title |
| gtf2sqlite | Build and save a TxDb object containing gene annotation |
| histogram-methods | histogram |
| loadAnnotation-methods | Load annotation and prepare a list of features for later |
| MungeColumn | Title |
| ProcessLinear | Title |
| qualFilter | filter find_circ.py-generated splice candidates |
| readCircs | read a tabular circRNA candidate list |
| resTable-methods | resTable |
| summarizeCircs-methods | load circRNA detection output to a SummarizedExperiment... |
| testCoordinateIndexing | test if input and annotation have the same coordinate... |
| uniqReadsQC-methods | A scatterplot of total to unique reads supporting a... |
| writeBedTracks-methods | writeBedTracks |
