Files in BIMSBbioinfo/ciRcus
Annotation, analysis and visualization of circRNA data

.Rbuildignore
.Rinstignore
.gitignore
.lintr
.travis.yml
CHANGELOG.md
DESCRIPTION
NAMESPACE
R/annotate.R R/circbase.R R/circus.R R/exportData.R R/filterData.R R/quantification.R R/readData.R R/summarize.R R/utils.R R/visualize.R README.md
ciRcus.Rproj
inst/.lintr
inst/extdata/Sy5y_D0_sites.bed
inst/extdata/ciri_demo_hek/HEK_RNaseR_CIRI_sites.txt
inst/extdata/ciri_demo_hek/HEK_riborezo_CIRI_sites.txt
inst/extdata/db/hsa_ens75_minimal.sqlite
inst/extdata/db/test.sqlite
inst/extdata/encode_demo_small/FrontalCortex_rep1_sites.bed
inst/extdata/encode_demo_small/FrontalCortex_rep2_sites.bed
inst/extdata/encode_demo_small/HeartF_rep1_sites.bed
inst/extdata/encode_demo_small/HeartF_rep2_sites.bed
inst/extdata/encode_demo_small/Liver_rep1_sites.bed
inst/extdata/encode_demo_small/Liver_rep2_sites.bed
inst/scripts/test_load_data.R man/AnnotateRanges.Rd man/MungeColumn.Rd man/ProcessLinear.Rd man/annotPie-methods.Rd man/annotateCircs-methods.Rd man/annotateFlanks.Rd man/annotateHostGenes.Rd man/annotateJunctions.Rd man/bedTracks-methods.Rd man/ciRcus.Rd man/circLinRatio-methods.Rd man/ensg2name.Rd man/getIDs.Rd man/getStudiesList.Rd man/gtf2sqlite.Rd man/histogram-methods.Rd man/loadAnnotation-methods.Rd man/qualFilter.Rd man/readCircs.Rd man/resTable-methods.Rd man/summarizeCircs-methods.Rd man/testCoordinateIndexing.Rd man/uniqReadsQC-methods.Rd man/writeBedTracks-methods.Rd tests/testthat.R tests/testthat/test-exportData.R tests/testthat/test-lint.R tests/testthat/test-loadAnnot.R vignettes/ciRcusManual.rmd
BIMSBbioinfo/ciRcus documentation built on Dec. 7, 2018, 1:07 p.m.