annotPie-methods: A piechart of gene features input circRNAs are spliced from

In BIMSBbioinfo/ciRcus: Annotation, analysis and visualization of circRNA data

Description

Describes proportions of circRNAs coming from particular gene features (coding sequence, UTRs, introns, intergenic regions, ...). Low-frequency features can be collapsed to "other".

Usage

annotPie(se, other.threshold = 0.02, ...)

## S4 method for signature 'RangedSummarizedExperiment'
annotPie(se,
  other.threshold = 0.02, ...)

Arguments

se	a SummarizedExperiment object
other.threshold	a minimum number of candidates feature should have to be present in the pie-chart. Can be expressed as fraction, or raw number.
...	other arguments

Value

ggplot2 pie-chart

BIMSBbioinfo/ciRcus documentation built on May 5, 2019, 10:25 a.m.