loadAnnotation-methods: Load annotation and prepare a list of features for later
In BIMSBbioinfo/ciRcus: Annotation, analysis and visualization of circRNA data
Description
Usage
Arguments
Value
Description
Loads a local .sqlite TxDb annotation file (e.g. created using
gtf2sqlite), returns a list of features needed for circRNA annotation.
Usage
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loadAnnotation(txdb)
## S4 method for signature 'TxDb'
loadAnnotation(txdb)
## S4 method for signature 'character'
loadAnnotation(txdb)
Arguments
txdb
TxDb gene annotation (or path to SQLite database file)
Value
A list of gene feature GRanges/GRangesList objects.
BIMSBbioinfo/ciRcus documentation built on May 5, 2019, 10:25 a.m.
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Description Usage Arguments Value
Description
Loads a local .sqlite TxDb annotation file (e.g. created using
gtf2sqlite), returns a list of features needed for circRNA annotation.
Usage
1 2 3 4 5 6 7 | loadAnnotation(txdb)
## S4 method for signature 'TxDb'
loadAnnotation(txdb)
## S4 method for signature 'character'
loadAnnotation(txdb)
|
Arguments
txdb |
TxDb gene annotation (or path to SQLite database file) |
Value
A list of gene feature GRanges/GRangesList objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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