gtf2sqlite: Build and save a TxDb object containing gene annotation
In BIMSBbioinfo/ciRcus: Annotation, analysis and visualization of circRNA data
Description
Loads the GTF file for the selected assembly, drops non-standard chromosomes,
adds "chr" prefix to Ensembl chromosome names and saves the SQLite database
to db.file
Usage
1
2
gtf2sqlite(assembly = c("hg19", "hg38", "mm10", "rn5", "rn6", "dm6",
"WBcel235"), db.file)
Arguments
assembly
abbreviation for one of the supported assemblies
db.file
a file to save SQLite database to
BIMSBbioinfo/ciRcus documentation built on May 5, 2019, 10:25 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Loads the GTF file for the selected assembly, drops non-standard chromosomes,
adds "chr" prefix to Ensembl chromosome names and saves the SQLite database
to db.file
Usage
1 2 | gtf2sqlite(assembly = c("hg19", "hg38", "mm10", "rn5", "rn6", "dm6",
"WBcel235"), db.file)
|
Arguments
assembly |
abbreviation for one of the supported assemblies |
db.file |
a file to save SQLite database to |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.