estimateGammaPval: Estimate P-values from resampling statistics using Gamma...

In BIMSBbioinfo/reg2gene: Predicting the target genes for regulatory elements

Description

The function estimates gamma distribution based P-values from the null distribution obtained from resampling, a gamma distribution is fit to the null distribution and p-values are calculated based on that fitted distribution. Details: stats::pgamma

Usage

estimateGammaPval(vals, orig, abs = TRUE, add = 0)

Arguments

vals	a vector or matrix of column vectors. Each column corresponds to coefficients obtained from resampling fit
orig	a single value or a vector of original coefficients obtained from the original matrix
abs	if TRUE, use absolute values of coefficients to fit a distribution
add	an numeric value defaults to 0. if more than 0, add that value to orig and vals. This way gamma distribution can model null distributions that have negative values.

BIMSBbioinfo/reg2gene documentation built on May 3, 2019, 6:42 p.m.