Files in BIMSBbioinfo/reg2gene
Predicting the target genes for regulatory elements

.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/BenchmarkGInteractions.R R/DataIntegRFunctions.R R/annotateDisease.R R/annotationF.R R/associateReg2Gene.R R/data.R R/downstreamFunctions.R R/metaAssociationsGI.R R/plotF.R R/reg2gene.R R/voteAssociationsGI.R README.md
data.Rproj
data/GRReg1_toy.RData
data/GRReg2_toy.RData
data/ModellingTest.RData
inst/data-raw/Data.R inst/doc/vignette.R inst/doc/vignette.Rmd
inst/doc/vignette.html
inst/extdata/test.bw
inst/extdata/test2.bw
inst/extdata/test3.bw
inst/hex-reg2gene.png
man/GRReg1_toy.Rd man/GRReg2_toy.Rd man/ModellingTest.Rd man/annotateInteractionsToGenes.Rd man/annotateToPromoter.Rd man/assocTable2.Rd man/associateReg2Gene.Rd man/benchPlotHelp.Rd man/benchmarkInteractions.Rd man/benchmarkInteractionssimple.Rd man/bwToGeneExp.Rd man/compareModelStat.Rd man/compareReg2Traits.Rd man/confusionMatrix.Rd man/corMat.Rd man/corResample.Rd man/createIntTrack.Rd man/dcorMat.Rd man/dcorResample.Rd man/detectGeneEnhPresence.Rd man/estimateGammaPval.Rd man/exonExpressionStrandAdjusted.Rd man/extractInfo.Rd man/filterPreBenchGIsimple.Rd man/forceByname.Rd man/getGeneEnhScoresDF.Rd man/getStatistics.Rd man/getTSS.Rd man/gettingGeneInfoEnsembl.Rd man/glmnetResample.Rd man/grReorg.Rd man/grlist2GI.Rd man/grlist2gr.Rd man/makeIndexTable.Rd man/manyZeros.Rd man/metaInteractions.Rd man/normalizeScores.Rd man/perGeneModelling.Rd man/plotGEEA.Rd man/plotInteractions.Rd man/quantifyGeneExpression.Rd man/qvaluCal.Rd man/reg2gene.Rd man/reg2trait.Rd man/regActivity.Rd man/regActivityAroundTSS.Rd man/rfResample.Rd man/scoresAsMcols.Rd man/selectEP.Rd man/selectGeneF.Rd man/selectRegR.Rd man/setColors.Rd man/stepwise.complete.cases.Rd man/voteInteractions.Rd man/votedEP.Rd man/zeroVar.Rd
pkg.Rproj
reg2gene.Rproj
tests/reg2gene_unit_tests.R tests/testthat/test_BenchmarkF.R tests/testthat/test_assocReg2gene.R tests/testthat/test_input_data.R tests/testthat/test_queryFunctions.R tests/testthat/test_regActF.R tests/testthat/test_voteandMeta.R
vignettes/Figures/BenchSimpleE.png
vignettes/Figures/Meta-Analysis_Simplified.png
vignettes/Figures/QuantificationDataIntegrationSimplified.png
vignettes/Figures/VOTING.png
vignettes/Figures/annotatExample.png
vignettes/Figures/annotateDiseaseF.png
vignettes/Figures/benchmarkF.png
vignettes/Figures/reg2geneflowchart2.png
vignettes/Figuresunnamed-chunk-12-1.png
vignettes/Figuresunnamed-chunk-13-1.png
vignettes/Figuresunnamed-chunk-14-1.png
vignettes/Figuresunnamed-chunk-15-1.png
vignettes/Figuresunnamed-chunk-16-1.png
vignettes/Figuresunnamed-chunk-17-1.png
vignettes/Figuresunnamed-chunk-18-1.png
vignettes/Figuresunnamed-chunk-19-1.png
vignettes/vignette.R vignettes/vignette.Rmd
vignettes/vignette.html
vignettes/vignetteExtended.R vignettes/vignetteExtended.Rmd
vignettes/vignetteExtended.html
BIMSBbioinfo/reg2gene documentation built on May 10, 2018, 8:02 a.m.