Files in BIMSBbioinfo/reg2gene
Predicting the target genes for regulatory elements
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/BenchmarkGInteractions.R
R/DataIntegRFunctions.R
R/annotateDisease.R
R/annotationF.R
R/associateReg2Gene.R
R/data.R
R/downstreamFunctions.R
R/metaAssociationsGI.R
R/plotF.R
R/reg2gene.R
R/voteAssociationsGI.R
README.md
data.Rproj
data/GRReg1_toy.RData
data/GRReg2_toy.RData
data/ModellingTest.RData
inst/data-raw/Data.R
inst/doc/vignette.R
inst/doc/vignette.Rmd
inst/doc/vignette.html
inst/extdata/test.bw
inst/extdata/test2.bw
inst/extdata/test3.bw
inst/hex-reg2gene.png
man/GRReg1_toy.Rd
man/GRReg2_toy.Rd
man/ModellingTest.Rd
man/annotateInteractionsToGenes.Rd
man/annotateToPromoter.Rd
man/assocTable2.Rd
man/associateReg2Gene.Rd
man/benchPlotHelp.Rd
man/benchmarkInteractions.Rd
man/benchmarkInteractionssimple.Rd
man/bwToGeneExp.Rd
man/compareModelStat.Rd
man/compareReg2Traits.Rd
man/confusionMatrix.Rd
man/corMat.Rd
man/corResample.Rd
man/createIntTrack.Rd
man/dcorMat.Rd
man/dcorResample.Rd
man/detectGeneEnhPresence.Rd
man/estimateGammaPval.Rd
man/exonExpressionStrandAdjusted.Rd
man/extractInfo.Rd
man/filterPreBenchGIsimple.Rd
man/forceByname.Rd
man/getGeneEnhScoresDF.Rd
man/getStatistics.Rd
man/getTSS.Rd
man/gettingGeneInfoEnsembl.Rd
man/glmnetResample.Rd
man/grReorg.Rd
man/grlist2GI.Rd
man/grlist2gr.Rd
man/makeIndexTable.Rd
man/manyZeros.Rd
man/metaInteractions.Rd
man/normalizeScores.Rd
man/perGeneModelling.Rd
man/plotGEEA.Rd
man/plotInteractions.Rd
man/quantifyGeneExpression.Rd
man/qvaluCal.Rd
man/reg2gene.Rd
man/reg2trait.Rd
man/regActivity.Rd
man/regActivityAroundTSS.Rd
man/rfResample.Rd
man/scoresAsMcols.Rd
man/selectEP.Rd
man/selectGeneF.Rd
man/selectRegR.Rd
man/setColors.Rd
man/stepwise.complete.cases.Rd
man/voteInteractions.Rd
man/votedEP.Rd
man/zeroVar.Rd
pkg.Rproj
reg2gene.Rproj
tests/reg2gene_unit_tests.R
tests/testthat/test_BenchmarkF.R
tests/testthat/test_assocReg2gene.R
tests/testthat/test_input_data.R
tests/testthat/test_queryFunctions.R
tests/testthat/test_regActF.R
tests/testthat/test_voteandMeta.R
vignettes/Figures/BenchSimpleE.png
vignettes/Figures/Meta-Analysis_Simplified.png
vignettes/Figures/QuantificationDataIntegrationSimplified.png
vignettes/Figures/VOTING.png
vignettes/Figures/annotatExample.png
vignettes/Figures/annotateDiseaseF.png
vignettes/Figures/benchmarkF.png
vignettes/Figures/reg2geneflowchart2.png
vignettes/Figuresunnamed-chunk-12-1.png
vignettes/Figuresunnamed-chunk-13-1.png
vignettes/Figuresunnamed-chunk-14-1.png
vignettes/Figuresunnamed-chunk-15-1.png
vignettes/Figuresunnamed-chunk-16-1.png
vignettes/Figuresunnamed-chunk-17-1.png
vignettes/Figuresunnamed-chunk-18-1.png
vignettes/Figuresunnamed-chunk-19-1.png
vignettes/vignette.R
vignettes/vignette.Rmd
vignettes/vignette.html
vignettes/vignetteExtended.R
vignettes/vignetteExtended.Rmd
vignettes/vignetteExtended.html
