Description Usage Arguments Value Author(s)
Function that separates stranded and unstranded libraries and quantifies exon expression separately for stranded libraries eg expression of exons located on the + strand is quantified using forward libraries if libraries are unstranded then exon orientations is not taken into account
1 2 | exonExpressionStrandAdjusted(exonsForQuant, exonsSplitted, target, sampleIDs,
libStrand, mc.cores, summaryOperation)
|
target |
character, paths to bigwig files |
sampleIDs |
character, name of samples/bigwig files |
libStrand |
character, library strandness ("+","-","*") |
mc.cores |
integer, number of cores for mclapply |
summaryOperation |
argument for ScoreMatrixBin() how to quantify scores |
exons |
GRanges object with exon coordinates and metadata about genes |
exons.splitted |
GRanges object with exon coordinates splitted based on the strand. |
Granges object with metadata which corresponds to quantified scores per input exon regions and bigwig files
Inga Patarcic
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