subsetHeatmap: Subset heatmapResults object

In BMILAB/movAPA: movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation

Subset heatmapResults object

Description

heatmapResults is a generic class to store differential analyses results, which is part of a movRes object. subsetHeatmap is to filter a heatmapResults by padj and/or value thresholds.

Usage

subsetHeatmap(
  heat,
  padjThd = 0.1,
  valueThd = NULL,
  upThd = NULL,
  dnThd = NULL,
  returnTF = FALSE
)

Arguments

heat	a heatmapResults object
padjThd	a cutoff for padj
valueThd	a cutoff for value, to filter by abs(..)>=valueThd
upThd	a cutoff to filter value by ...>=upThd (up-regulated)
dnThd	a cutoff to filter by value by ...<=dnThd (down-regulated)
returnTF	If TRUE, then return a matrix with TRUE or FALSE, otherwise return a heatmapResults object.

BMILAB/movAPA documentation built on Jan. 3, 2024, 11:09 p.m.