testExt3UTR: Test extended 3'UTR length
In BMILAB/movAPA: movAPA: Modeling and Visualization of Dynamics of Alternative PolyAdenylation
testExt3UTR R Documentation
Test extended 3'UTR length
Description
testExt3UTR test the number of 3UTR PA changes after extending a given length.
Usage
testExt3UTR(pacds, ext3UTRlen = seq(1000, 10000, by = 1000), toPlot = TRUE)
Arguments
pacds
a PACdataset object, which should already be annotated by annotatePAC().
ext3UTRlen
an integer vector denoting the extended lengthes, like c(1000, 2000, 3000)
toPlot
whether to plot a barplot for the number changes.
Value
A data frame with two columns: ext3UTRLen, addedPAnum denoting numbers of recruited 3UTR PAs for each extended length.
Examples
data(PACds)
testExt3UTR(PACds, seq(1000, 10000, by=1000))
BMILAB/movAPA documentation built on Jan. 3, 2024, 11:09 p.m.
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| testExt3UTR | R Documentation |
Test extended 3'UTR length
Description
testExt3UTR test the number of 3UTR PA changes after extending a given length.
Usage
testExt3UTR(pacds, ext3UTRlen = seq(1000, 10000, by = 1000), toPlot = TRUE)
Arguments
pacds |
a PACdataset object, which should already be annotated by annotatePAC(). |
ext3UTRlen |
an integer vector denoting the extended lengthes, like c(1000, 2000, 3000) |
toPlot |
whether to plot a barplot for the number changes. |
Value
A data frame with two columns: ext3UTRLen, addedPAnum denoting numbers of recruited 3UTR PAs for each extended length.
Examples
data(PACds)
testExt3UTR(PACds, seq(1000, 10000, by=1000))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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