changeOutDirectory | Change outDirectory |
exploreConcepts | Extract synonyms and descendants for concepts of interest. |
findPatients | Find patients based on clinical critera |
getClinicalData | Retrieves all patient clinical data |
getConditions | Retrieves all patient clinical data from Condition table |
getDemographics | Retrieves patient demographic data |
getDevices | Retrieves all patient clinical data from Device table |
getEncounters | Retrieves patient clinical encounter data |
getMeasurements | Retrieves all patient clinical data from Measurement table |
getMedications | Retrieves all patient clinical data from Medications table |
getObservations | Retrieves all patient clinical data from Observations table |
getProcedures | Retrieves all patient clinical data from Procedures table |
makeDataOntology | Creates general data ontology |
showDataTypes | Shows available data types from the OMOP ontology |
summarizeDemographics | Summarizes patient demographic data |
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