getObservations: Retrieves all patient clinical data from Observations table
In BenGlicksberg/ROMOP: A Light-Weight R Package for Interfacing with OMOP-Formatted Electronic Health Record Data
Description
Usage
Arguments
Value
Examples
View source: R/getClinicalData.R
Description
Produces a table for relevant concepts contained in the 'observation' table mapped through the data ontology for a patient list. Data retrieved include: observation_type, value, etc.
Usage
1
getObservations(patient_list, declare = FALSE)
Arguments
patient_list
Comma-separated string of patient ids
declare
TRUE/FALSE will output status and data information during the process
Value
a table of relevant clinical data contained with in the 'observation' table
Examples
1
ptObsData <- getObservations("1,2", declare=TRUE)
BenGlicksberg/ROMOP documentation built on March 6, 2020, 8:15 p.m.
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Description Usage Arguments Value Examples
View source: R/getClinicalData.R
Description
Produces a table for relevant concepts contained in the 'observation' table mapped through the data ontology for a patient list. Data retrieved include: observation_type, value, etc.
Usage
1 | getObservations(patient_list, declare = FALSE)
|
Arguments
patient_list |
Comma-separated string of patient ids |
declare |
TRUE/FALSE will output status and data information during the process |
Value
a table of relevant clinical data contained with in the 'observation' table
Examples
1 | ptObsData <- getObservations("1,2", declare=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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