getClinicalData: Retrieves all patient clinical data

In BenGlicksberg/ROMOP: A Light-Weight R Package for Interfacing with OMOP-Formatted Electronic Health Record Data

Description

Wrapper for domain-specific getData functions (e.g., getObservations). Produces a list of tables for all relevant domains.

Usage

getClinicalData(patient_list, declare = FALSE)

Arguments

patient_list	Comma-separated string of patient ids
declare	TRUE/FALSE will output status and data information during the process

Value

a list of tables for each all data within each domain (e.g., Condition) for all patients provided (can access by ptClinicalData$Condition).

Examples

ptClinicalData <- getClinicalData("1,2", declare=TRUE)

BenGlicksberg/ROMOP documentation built on March 6, 2020, 8:15 p.m.