exploreConcepts: Extract synonyms and descendants for concepts of interest.
In BenGlicksberg/ROMOP: A Light-Weight R Package for Interfacing with OMOP-Formatted Electronic Health Record Data
Description
Usage
Arguments
Value
Examples
View source: R/exploreConcepts.R
Description
For given vocabulary and concept, returns the mapped standard concept(s) as well as decendent concept(s). Requires dataOntology to have been created (makeDataOntology funciton).
Usage
1
exploreConcepts(vocabulary, codes)
Arguments
vocabulary
Comma-separated string of relevant vocabularies for inclusion criteria
codes
Semi-colon separated string of code concepts for inclusion criteria, corresponding to the order for vocabulary. Multiple codes can be used per vocabulary and should be comma-separated.
Value
Returns a table of concepts contained under (i.e., below in the heirarchy) the query concept.
Examples
1
conceptsInfo <- exploreConcepts(vocabulary = “ATC, ICD10CM”, codes = “A01A; K50, K51”)
BenGlicksberg/ROMOP documentation built on March 6, 2020, 8:15 p.m.
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Description Usage Arguments Value Examples
View source: R/exploreConcepts.R
Description
For given vocabulary and concept, returns the mapped standard concept(s) as well as decendent concept(s). Requires dataOntology to have been created (makeDataOntology funciton).
Usage
1 | exploreConcepts(vocabulary, codes)
|
Arguments
vocabulary |
Comma-separated string of relevant vocabularies for inclusion criteria |
codes |
Semi-colon separated string of code concepts for inclusion criteria, corresponding to the order for vocabulary. Multiple codes can be used per vocabulary and should be comma-separated. |
Value
Returns a table of concepts contained under (i.e., below in the heirarchy) the query concept.
Examples
1 | conceptsInfo <- exploreConcepts(vocabulary = “ATC, ICD10CM”, codes = “A01A; K50, K51”)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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