createNovoalignPipelineSamplesheet: create a sample sheet for the novoalign pipeline
In BrentLab/brentlabRnaSeqTools: Management/QC for brentlab RNAseq data
View source: R/NextflowProcessing.R
createNovoalignPipelineSamplesheet R Documentation
create a sample sheet for the novoalign pipeline
Description
create a sample sheet for the novoalign pipeline
Usage
createNovoalignPipelineSamplesheet(meta_df, sequence_dir_prefix)
Arguments
meta_df
metadata for the samples you'd like to QC. note that these
must be included in the pipeline_output_dirpath
sequence_dir_prefix
filepath to append to the run_1234_samples/fastq.fq.gz
eg "/scratch/mblab/chasem/rnaseq_pipeline/scratch_sequence"
Value
a dataframe in correct format for novo+hsteq pipeline
BrentLab/brentlabRnaSeqTools documentation built on Aug. 20, 2023, 9:22 a.m.
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View source: R/NextflowProcessing.R
| createNovoalignPipelineSamplesheet | R Documentation |
create a sample sheet for the novoalign pipeline
Description
create a sample sheet for the novoalign pipeline
Usage
createNovoalignPipelineSamplesheet(meta_df, sequence_dir_prefix)
Arguments
meta_df |
metadata for the samples you'd like to QC. note that these must be included in the pipeline_output_dirpath |
sequence_dir_prefix |
filepath to append to the run_1234_samples/fastq.fq.gz eg "/scratch/mblab/chasem/rnaseq_pipeline/scratch_sequence" |
Value
a dataframe in correct format for novo+hsteq pipeline
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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