fltrLowReplicateParams: filter low replicate parameters from metadata

In BrentLab/brentlabRnaSeqTools: Management/QC for brentlab RNAseq data

filter low replicate parameters from metadata

Description

given a model formula, remove samples with less than a specified number of replicates from the metadata

Usage

fltrLowReplicateParams(metadata_df, design_formula, replicate_threshold = 2)

Arguments

metadata_df	a data frame that contains at least the model paramters of interest
design_formula	an R formula, eg ~libraryDate+treatment, of parameters contained in the metadata_df
replicate_threshold	the number of replicates below which samples will be removed. Default is 2

Value

the input metadata with samples in replicate groups with less than the specified thershold filtered out

BrentLab/brentlabRnaSeqTools documentation built on Aug. 20, 2023, 9:22 a.m.