htseq_libraryComplexity: Calculate percentage of library accounted for by top...
In BrentLab/brentlabRnaSeqTools: Management/QC for brentlab RNAseq data
View source: R/ProcessingPipelineFunctions.R
htseq_libraryComplexity R Documentation
Calculate percentage of library accounted for by top expressed genes
Description
Calculate percentage of library accounted for by top expressed genes
Usage
htseq_libraryComplexity(htseq_filename, num_genes = 25)
Arguments
htseq_filename
path to the htseq output for a given sample
num_genes
used to select the top expressed n genes. Default is 25
Value
sum(top_n_genes) / total_counted_reads, rounded to 4 decimal places
BrentLab/brentlabRnaSeqTools documentation built on Aug. 20, 2023, 9:22 a.m.
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View source: R/ProcessingPipelineFunctions.R
| htseq_libraryComplexity | R Documentation |
Calculate percentage of library accounted for by top expressed genes
Description
Calculate percentage of library accounted for by top expressed genes
Usage
htseq_libraryComplexity(htseq_filename, num_genes = 25)
Arguments
htseq_filename |
path to the htseq output for a given sample |
num_genes |
used to select the top expressed n genes. Default is 25 |
Value
sum(top_n_genes) / total_counted_reads, rounded to 4 decimal places
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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