calculateQvalue: Calculate q-values from coelution score for all detected...

In CCprofiler/CCprofiler: Complex feature detection using SEC protein chromatograms.

Description

Calculate q-values from coelution score for all detected features.

Usage

calculateQvalue(features, lambda = 0.5, plot = TRUE, PDF = FALSE,
  name = "q_value_stats")

Arguments

features	data.table with complex or protein features
lambda	numeric value between 0 and 1, default = 0.5
plot	logical, default = TRUE
PDF	logical, defalt = FALSE
name	character strimg specifying pdf name, default = "q_value_stats"

Value

An object of type collapsedComplexFeatures that is a list containing the following:

• feature data.table containing complex feature candidates in the following format:

  • subgroup The protein_ids of the feature separated by semi-colons.

  • left_sw The left boundary of the sliding-window feature.

  • right_sw The right boundary of the sliding-window feature.

  • score The intra-sliding-window-feature correlation.

CCprofiler/CCprofiler documentation built on May 19, 2021, 7:40 p.m.