API for CCprofiler/CCprofiler
Complex feature detection using SEC protein chromatograms.
| Global functions | |
|---|---|
| .collapseWideHypothesis | Man page Source code |
| .collapseWithinFeatureGroup | Source code |
| .helperFilterByParams | Source code |
| .helperSubset | Source code |
| .runGridComplexFeatureFinding | Source code |
| .runGridProteinFeatureFinding | Source code |
| .testGridParameter | Source code |
| .tracesTest | Man page Source code |
| SECexplorer_processing | Man page Source code |
| annotateComplexFeatures | Man page Source code |
| annotateMassDistribution | Man page Source code |
| annotateMolecularWeight | Man page Source code |
| annotateTraces | Man page Source code |
| appendSecondaryComplexFeatures | Man page Source code |
| calculateCoelutionScore | Man page Source code |
| calculateFeatureCorrelation | Man page Source code |
| calculatePathlength | Man page Source code |
| calculateQvalue | Man page Source code |
| calculateSibPepCorr | Man page Source code |
| calibrateMW | Man page Source code |
| callapseByUniqueFeatureGroups | Man page Source code |
| chooseBig | Source code |
| collapseComplexFeatures | Man page Source code |
| collapseHypothesis | Man page Source code |
| complexClustering | Man page Source code |
| convertIDs | Man page Source code |
| corumComplexHypotheses | Man page |
| corumComplexHypothesesRedundant | Man page |
| createGGplotColMap | Man page Source code |
| estimateComplexFeatureStoichiometry | Man page Source code |
| estimateDecoyFDR | Man page Source code |
| estimateGridSearchDecoyFDR | Man page Source code |
| exampleCalibrationTable | Man page |
| exampleComplexFeatures | Man page |
| exampleComplexHypotheses | Man page |
| exampleFractionAnnotation | Man page |
| exampleOpenSWATHinput | Man page |
| examplePCPdataLong | Man page |
| examplePCPdataWide | Man page |
| examplePeptideTraces | Man page |
| examplePeptideTracesFiltered | Man page |
| examplePeptideTracesUnannotated | Man page |
| exampleProteinFeatures | Man page |
| exampleProteinTraces | Man page |
| exampleTraceAnnotation | Man page |
| filterByMaxCorr | Man page Source code |
| filterBySibPepCorr | Man page Source code |
| filterByStepwiseCompleteness | Man page Source code |
| filterConsecutiveIdStretches | Man page Source code |
| filterFeatures | Man page Source code |
| filterGridSearchResults | Man page Source code |
| findComplexFeatures | Man page Source code |
| findComplexFeaturesPP | Man page Source code |
| findComplexFeaturesSW | Man page Source code |
| findComplexFeaturesWithinWindow | Man page Source code |
| findFeatureBoundaries | Man page Source code |
| findMissingValues | Man page Source code Source code |
| findProteinFeatures | Man page Source code |
| generateBinaryNetwork | Man page Source code |
| generateComplexDecoys | Man page Source code |
| generateComplexTargets | Man page Source code |
| generateDecoys | Man page Source code |
| generateRandomPepTraces | Man page Source code |
| getBestFeatures | Man page Source code |
| getBestParameterData | Man page Source code |
| getBestParameterStats | Man page Source code |
| getBestParameterStats_constraintFDR | Man page Source code |
| getBestQvalueParameters | Man page Source code |
| getDistance | Man page Source code |
| getDistanceMatrix | Man page Source code |
| getGenePepList | Man page Source code |
| getIntensityMatrix | Man page Source code |
| getMWcalibration | Source code |
| getUniqueFeatureGroups | Man page Source code |
| importFromOpenSWATH | Man page Source code |
| importPCPdata | Man page Source code |
| imputeMissingVals | Man page Source code |
| imputeMissingValues | Man page Source code |
| imputeTraces | Man page Source code |
| performComplexGridSearch | Man page Source code |
| performProteinGridSearch | Man page Source code |
| plot.traces | Man page Source code |
| plotComplexCompletenessScatter | Man page Source code |
| plotComplexMScoveragePie | Man page Source code |
| plotComplexMScoverageScatter | Man page Source code |
| plotFeatures | Man page Source code |
| plotIdFDRspace | Man page Source code |
| plotImputationSummary | Man page Source code |
| plotProteinMScoveragePie | Man page Source code |
| plotScoreDistribution | Man page Source code |
| plotSibPepCorrDensities | Man page Source code |
| plotSummarizedComplexes | Man page Source code |
| plotSummarizedMScoverage | Man page Source code |
| proteinQuantification | Man page Source code |
| qvaluePositivesPlot | Man page Source code |
| qvaluePositivesPlotGrid | Man page Source code |
| rocSibPepCorr | Man page Source code |
| runSECexplorer | Man page Source code |
| runSlidingWindow | Man page Source code |
| scoreFeatures | Man page Source code |
| subset.traces | Man page Source code |
| summarizeFeatures | Man page Source code |
| summarizeMassDistribution | Man page Source code |
| summary.traces | Man page Source code |
| toLongFormat | Man page Source code |
