findComplexFeaturesWithinWindow: Detect subgroups within a window. This is a helper function...

In CCprofiler/CCprofiler: Complex feature detection using SEC protein chromatograms.

Description

Detect subgroups within a window. This is a helper function and should be called by 'findComplexFeaturesSW'.

Usage

findComplexFeaturesWithinWindow(window.trace.mat, protein.names,
  corr.cutoff, with.plot = F, sec = NULL)

Arguments

window.trace.mat	A matrix of intensity values where chromatograms of individual proteins are given by the rows.
protein.names	A vector with protein identifiers. This vector has to have the same length as the number of rows in 'window.trace.mat'.
corr.cutoff	The correlation value for chromatograms above which proteins are considered to be coeluting.

Value

A list containing lists that describe the found subclusters. An individual list has the structure:

• subunits: character vector

• mean.corr: intra cluster correlation

CCprofiler/CCprofiler documentation built on May 19, 2021, 7:40 p.m.