convertIDs: Convert any input ids to uniprotkb accession ids.

In CCprofiler/CCprofiler: Complex feature detection using SEC protein chromatograms.

Description

Convert any input ids to uniprotkb accession ids.

Usage

convertIDs(ids = ids, type = "UNIPROTKB",
  traces.obj = fullProtTracesHEK)

Arguments

ids	A character vector containing names or identifiers.
type	A character string specifying the type of ids.
traces.obj	An object of type traces.obj.

Value

A data.table containing the following information:

• not_defined A character vector containing all input ids that are not defined in the current version of the package.

• no_ms_signal A chaacter vector of all input ids that do not have an MS signal in the current SEC experiment.

• protein_ids A chaacter vector of all uniprotkb accession ids used for further analysis.

• mapping_table A data.table containing the following information:

  • UNIPROTKB Uniprotkb accession ids.

  • name The combined name for the uniprotkb accession ids. This is UNIPROTKB | uniprot name.

  • input type If the input type was not UNIPROTKB this contains the ids of the input type.

CCprofiler/CCprofiler documentation built on May 19, 2021, 7:40 p.m.