calculateSibPepCorr: calculateSibPepCorr

In CCprofiler/CCprofiler: Complex feature detection using SEC protein chromatograms.

Description

Calculate sibling peptide correlation in traces.object of type peptide.

Usage

calculateSibPepCorr(traces, plot = TRUE, PDF = FALSE,
  name = "SibPepCorr_densityplot")

Arguments

traces	An object of type traces.
plot	logical,wether to print SibPepCorr density plot to R console. Deafult is TRUE.
PDF	logical, wether to print SibPepCorr density plot to a PDF file. Deafult is FALSE.
name	Character string with name of the plot, only used if PDF=TRUE. PDF file is saved under name.pdf. Default is "SibPepCorr_densityplot".

Value

An object of type traces with added SibPepCorr column.

Examples

## Load example data
 tracesRaw <- examplePeptideTracesUnannotated

 ## Calculate the SibPepCorr of every peptide
 tracesRawSpc <- calculateSibPepCorr(traces = tracesRaw)

 tracesRawSpc$trace_annotation

CCprofiler/CCprofiler documentation built on May 19, 2021, 7:40 p.m.