callapseByUniqueFeatureGroups: Collapse features by unique feature groups

In CCprofiler/CCprofiler: Complex feature detection using SEC protein chromatograms.

Description

Collapse features with the same unique_feature_identifier as determined by getUniqueFeatureGroups.

Usage

callapseByUniqueFeatureGroups(feature_table, rm_decoys = TRUE)

Arguments

feature_table	data.table containing filtered complex feature results with an extra column with a unique_feature_identifier.
rm_decoys	Logical, whether to remove decoys before collapsing, default = TRUE.

Value

data.table containing collapsed complex features.

Examples

## run unique feature annotation
complexFeaturesUnique <- getUniqueFeatureGroups(exampleComplexFeatures,
                                                rt_height=2,
                                                distance_cutoff=1,
                                                plot=TRUE)
## Collapse across unique features
complexFeaturesCollapsed <- callapseByUniqueFeatureGroups(complexFeaturesUnique,
                                                          rm_decoys=TRUE)
## Inspect output
complexFeaturesCollapsed

CCprofiler/CCprofiler documentation built on May 19, 2021, 7:40 p.m.