generateBinaryNetwork: Generate a binary network from complexes.

In CCprofiler/CCprofiler: Complex feature detection using SEC protein chromatograms.

Description

Generate binary network from concrete complex hypotheses (e.g. CORUM).

Usage

generateBinaryNetwork(complex_hypotheses)

Arguments

complex_hypotheses

data.table specifying complex hypotheses. Must have the following columns: complex_id: character strings, a unique id for every complex protein_id: character strings, the protein id, e.g. Uniprot id

Value

data.table with binary interactions between "a" and "b"

Examples

## Load example Data
complexHypotheses <- exampleComplexHypotheses

## Generate the binary network
binaryInteractions <- generateBinaryNetwork(complex_hypotheses = complexHypotheses)
##Inspect the result
binaryInteractions

CCprofiler/CCprofiler documentation built on May 19, 2021, 7:40 p.m.