plotComplexCompletenessScatter: Scatter plot of complex completeness

In CCprofiler/CCprofiler: Complex feature detection using SEC protein chromatograms.

Description

Plot the number of observed co-eluting subunits over the number of subunits in the hypothesis, colour-coded by the completeness. This is only taking into account targets. If decoys are present they are removed using "DECOY" as a flag.

Usage

plotComplexCompletenessScatter(complexFeatures, PDF = FALSE,
  name = "complex_completeness_scatter")

Arguments

complexFeatures	data.table as reported by findComplexFeatures or findProteinFeatures.
PDF	Logical, whether to generate a PDF file with the summary plot. Default is FALSE.
name	Character string specifying the name of the PDF file of the summary plot. Only applicable if PDF=TRUE. Default is "feature_summary".

Examples

## Load example complex feature finding results:
complexFeatures <- exampleComplexFeatures
## Run plotting function:
plotComplexCompletenessScatter(complexFeatures)

CCprofiler/CCprofiler documentation built on May 19, 2021, 7:40 p.m.