Indiv_Perm: Computes PERMANOVA with vegan using specific group...

In CHKim5/LMSstat: AUTOMATION OF STATISTICAL TESTS WITH AN IDENTICAL DATA INPUT.

Description

Computes PERMANOVA with vegan using specific group information

Usage

Indiv_Perm(Data, method = "bray")

Arguments

Data	csv file with Header as False First column with Sample Second column with Multilevel(Mixomics) so that it can be compatible with other multivariate statistics Third column with Group information. Rest of the columns are the metabolites to be tested.
method	Dissimilarity index c("manhattan", "euclidean", "canberra", "clark", "bray", "kulczynski", "jaccard", "gower", "altGower", "morisita", "horn", "mountford", "raup", "binomial", "chao", "cao", "mahalanobis", "chisq",chord")

Value

vegan::adonis2(Dist_Met~Group,method = "bray",by = NULL,data = x_y_coord_G)

Examples

data(Data)
Indiv_Perm(Data)

CHKim5/LMSstat documentation built on Dec. 17, 2021, 12:55 p.m.