Multi_Perm: Computes PERMANOVA with vegan using multiple group...

In CHKim5/LMSstat: AUTOMATION OF STATISTICAL TESTS WITH AN IDENTICAL DATA INPUT.

Description

Computes PERMANOVA with vegan using multiple group information

Usage

Multi_Perm(Data, Classification, method = "bray")

Arguments

Data	csv file with Header as False First column with Sample Second column with Multilevel(Mixomics) so that it can be compatible with other multivariate statistics Third column with Group information. Rest of the columns are the metabolites to be tested.
Classification	csv file with Header as False ;First column with Sample; every other column can be used to indicate multiple classifiers
method	Dissimilarity index c("manhattan", "euclidean", "canberra", "clark", "bray", "kulczynski", "jaccard", "gower", "altGower", "morisita", "horn", "mountford", "raup", "binomial", "chao", "cao", "mahalanobis", "chisq",chord")

Value

vegan::adonis2(Dist_Met~Group,method = "bray",by = NULL,data = x_y_coord_G)

Examples

data(Data)
data(Classification)
Result<-Multi_Perm(Data,Classification)
Note that the code recognizes each class as a factor.

CHKim5/LMSstat documentation built on Dec. 17, 2021, 12:55 p.m.