PCoA: Automatically save PCoA plots for the selected dimension...

In CHKim5/LMSstat: AUTOMATION OF STATISTICAL TESTS WITH AN IDENTICAL DATA INPUT.

Description

Automatically save PCoA plots for the selected dimension metrics

Usage

PCoA(
  Data,
  methods = c("manhattan", "bray"),
  color = c("#FF3300", "#660099", "#FFCC00", "#99CC00", "#0066CC", "#FF6600"),
  legend_position = "none",
  components = c(1, 2),
  fig_width = 24,
  fig_height = 20,
  dotsize = 3,
  names = F,
  labsize = 3,
  ellipse = T
)

Arguments

Data	uploaded data
methods	c("manhattan", "euclidean", "canberra", "clark", "bray", "kulczynski", "jaccard", "gower", "altGower", "morisita", "horn", "raup", "binomial", "mahalanobis", "chisq","chord")
color	colors used for ggplots.color=c("#FF3300","#FF6600","#FFCC00","#99CC00","#0066CC","#660099")
legend_position	legend position "none","left","right","bottom","top"
components	PCA components c(1,3)
fig_width	figure size
fig_height	figure size
dotsize	dot size
names	whether the names are to be indicated T,F
labsize	label size
ellipse	T, F

Value

PCoA plot

Examples

data(Data)
PCoA(Data,methods = c("euclidian","manhattan","bray"))

CHKim5/LMSstat documentation built on Dec. 17, 2021, 12:55 p.m.