AS_heatmap: Heatmap with top annotation bar

In CHKim5/LMSstat: AUTOMATION OF STATISTICAL TESTS WITH AN IDENTICAL DATA INPUT.

Description

Heatmap with top annotation bar

Usage

AS_heatmap(
  data,
  col = c("green", "white", "red"),
  col_lim = c(-3, 0, 3),
  reverse = F,
  distance = "euclidean",
  rownames = TRUE,
  colnames = FALSE,
  Hsize = c(12, 6),
  g_legend = "Group",
  h_legend = "Intensity",
  T_size = 10,
  R_size = 7,
  C_size = 5,
  Gcol = c(ASD = "black", HGH = "red", LAC = "blue", LUE = "grey", SDF = "yellow", WEI
    = "green"),
  Title = "Sample Heatmap",
  dend_h = 0.5,
  a_h = 0.2
)

Arguments

data	data inheriting from D_tran
col	colors for heatmap
col_lim	color boundaries c(-3, 0, 3)
reverse	Reverse column and rows
distance	"pearson", "manhattan","euclidean","spearman","kendall"
rownames	rownames
colnames	colnames
Hsize	Width & Height c(a,b)
g_legend	Annotation legend title
h_legend	Heatmap legend title
T_size	Title text size
R_size	row text size
C_size	column text size
Gcol	Color for top_annotation bar c("ASD" = "black","HGH"="red","LAC"="blue","LUE" ="grey","SDF" = "yellow","WEI"="green")
Title	title
dend_h	dendrite height
a_h	top annotation height

Value

Heatmap

Examples

data(Data)
data<-D_tran(Data,param="Auto",save=F)
AS_heatmap(data)
dev.off()

CHKim5/LMSstat documentation built on Dec. 17, 2021, 12:55 p.m.