Files in CHuanSite/SJD
Structured Joint Decomposition (SJD)
.Rbuildignore
.github/.DS_Store
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/.DS_Store
R/BEMA.R
R/SJDScorePlotter.R
R/ScreePlot_LCvsPC.R
R/addSJDtoSeurat.R
R/assemble.byComponent.R
R/assemble.byDataset.R
R/balanceData.R
R/concatICA.R
R/concatNMF.R
R/concatPCA.R
R/filterNAValue.R
R/frameToMatrix.R
R/geneScreen.R
R/getMatch.R
R/jointICA.R
R/jointNMF.R
R/jointPCA.R
R/linkedPCA.R
R/mtx.R
R/nameAssignment.R
R/nameExtractor.R
R/neuroGenesis4.R
R/newNMF.R
R/normalizeData.R
R/projectNMF.R
R/projectiLCA.R
R/pve.R
R/quantileMarchenkoPastur.R
R/sepICA.R
R/sepNMF.R
R/sepPCA.R
R/simFunction.R
R/sjdWrap.R
R/sjdWrapProjection.R
R/twoStageLCA.R
R/twoStageLCA.rank.R
R/twoStageiLCA.R
R/twoStageiLCA.rank.R
R/umap_tsne_onLC.R
R/weightData.R
README.md
SJD.Rproj
_pkgdown.yml
data/.DS_Store
data/NeuroGenesis4.RData
data/NeuroGenesis4.afterWrap.RData
data/NeuroGenesis4.info.RData
data/mtx.RData
docs/404.html
docs/articles/SJD.html
docs/articles/StructralJointDecomposition.html
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docs/articles/twoStageLCA.html
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docs/pkgdown.yml
docs/reference/BEMA.html
docs/reference/NeuroGenesis4.afterWrap.html
docs/reference/NeuroGenesis4.html
docs/reference/NeuroGenesis4.info.html
docs/reference/Procrustes.html
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docs/reference/SJDScorePlotter.html
docs/reference/assemble.byDataset.html
docs/reference/assemblePNG.byComponent.html
docs/reference/balanceData.html
docs/reference/compNameAssign.html
docs/reference/compNameAssignSep.html
docs/reference/concatICA.html
docs/reference/concatNMF.html
docs/reference/concatPCA.html
docs/reference/configuration_setting_generation.html
docs/reference/datasetNameExtractor.html
docs/reference/filterNAValue.html
docs/reference/frameToMatrix.html
docs/reference/geneNameAssign.html
docs/reference/geneNameExtractor.html
docs/reference/geneScreen.html
docs/reference/getMatch.html
docs/reference/groupNameExtractor.html
docs/reference/index.html
docs/reference/jointICA.html
docs/reference/jointNMF.html
docs/reference/jointPCA.html
docs/reference/linkedPCA.html
docs/reference/marchenko_pastur_quantile.html
docs/reference/mtx.html
docs/reference/normalizeData.html
docs/reference/pveMultiple.html
docs/reference/pveSep.html
docs/reference/rebalanceData.html
docs/reference/rotate_component.html
docs/reference/sampleNameAssign.html
docs/reference/sampleNameAssignSep.html
docs/reference/sampleNameExtractor.html
docs/reference/scoreNameAssign.html
docs/reference/scoreNameAssignSep.html
docs/reference/score_generation.html
docs/reference/sepICA.html
docs/reference/sepNMF.html
docs/reference/sepPCA.html
docs/reference/simulated_data_generation.html
docs/reference/sjdWrap.html
docs/reference/sjdWrapProjection.html
docs/reference/twoStageLCA.html
docs/reference/twoStageLCA.rank.html
docs/reference/twoStageiLCA.html
docs/reference/twoStageiLCA.rank.html
docs/reference/weightData.html
docs/search.json
docs/sitemap.xml
man/BEMA.Rd
man/NeuroGenesis4.Rd
man/NeuroGenesis4.afterWrap.Rd
man/NeuroGenesis4.info.Rd
man/Procrustes.Rd
man/SJDScorePlotter.Rd
man/ScreePlot_LCvsPC.Rd
man/addSJDtoSeurat.Rd
man/assemble.byComponent.Rd
man/assemble.byDataset.Rd
man/balanceData.Rd
man/compNameAssign.Rd
man/compNameAssignSep.Rd
man/concatICA.Rd
man/concatNMF.Rd
man/concatPCA.Rd
man/configuration_setting_generation.Rd
man/datasetNameExtractor.Rd
man/filterNAValue.Rd
man/frameToMatrix.Rd
man/geneNameAssign.Rd
man/geneNameExtractor.Rd
man/geneScreen.Rd
man/getMatch.Rd
man/groupNameExtractor.Rd
man/jointICA.Rd
man/jointNMF.Rd
man/jointPCA.Rd
man/linkedPCA.Rd
man/marchenko_pastur_quantile.Rd
man/min_max_normalization.Rd
man/mtx.Rd
man/newNMF.Rd
man/normalizeData.Rd
man/projectNMF.Rd
man/projectiLCA.Rd
man/pveMultiple.Rd
man/pveSep.Rd
man/rebalanceData.Rd
man/rotate_component.Rd
man/sampleNameAssign.Rd
man/sampleNameAssignProj.Rd
man/sampleNameAssignSep.Rd
man/sampleNameExtractor.Rd
man/scoreNameAssign.Rd
man/scoreNameAssignProj.Rd
man/scoreNameAssignSep.Rd
man/score_generation.Rd
man/sepICA.Rd
man/sepNMF.Rd
man/sepPCA.Rd
man/simulated_data_generation.Rd
man/sjdWrap.Rd
man/sjdWrapProjection.Rd
man/twoStageLCA.Rd
man/twoStageLCA.rank.Rd
man/twoStageiLCA.Rd
man/twoStageiLCA.rank.Rd
man/umap_tsne_onLC.Rd
man/weightData.Rd
pkgdown/_pkgdown.yml
pythonExamples/SJD_in_python_example.ipynb
vignettes/.gitignore
vignettes/SJD.Rmd
vignettes/StructralJointDecomposition.Rmd
vignettes/twoStageLCA.Rmd
