KCorr_plot: Customized GGally::ggparis function

In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data

Customized GGally::ggparis function

Description

Customized GGally::ggparis function

Usage

KCorr_plot(
  ...,
  method = "spearman",
  density_fill = NULL,
  correlation_gradient = NULL,
  correlation_text_color = "red",
  correlation_text_size = 15,
  hex_color_palette = c("viridis", "inferno", "magma", "plasma", "cividis"),
  hex_fill = NULL
)

Arguments

...,	one or multiple dataframes containing bulk and pseudo-bulk RTs and the following columns:chr, start, end, group, basename, RT
method,	correlation method
density_fill,	diagonal plot fill color
correlation_gradient,	min, midpoint and max colors for the upper triangle
correlation_text_color,	text color upper triangle correlation
correlation_text_size,	text size upper triangle correlation
hex_color_palette,	color palette for the lower triangle density gradient
hex_fill,	multiple manual colors to used for the lower triangle density gradient, if provided hex_color_palette is ignored

Value

ggplot element

CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.