extractSubpop: separates S phase cells into sub-groups and calculates...

In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data

separates S phase cells into sub-groups and calculates relative pseudo-bulk RT

Description

separates S phase cells into sub-groups and calculates relative pseudo-bulk RT

Usage

extractSubpop(scCN, scRT, scVariability, subpopulation, RefRT = NULL)

Arguments

scCN,	S-phase cells scCN dataframe from Rebin function (after filtering,optional)
scRT,	pseudo-bulk-RT dataframe
scVariability,	single cell variability dataframe the Variability function
subpopulation,	dataframe containing sub-population info (Cell,basename,group,subpopulation)
RefRT,	Reference RT dataframe from RebinRT

Value

list

CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.