RT_clustering: Hclustering to identify RT signatures
In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data
RT_clustering R Documentation
Hclustering to identify RT signatures
Description
Hclustering to identify RT signatures
Usage
RT_clustering(
...,
deltaRT_th = 0.1,
CrossingRT = T,
n_clusters = NULL,
colors = NULL
)
Arguments
...,
bulk/pseudo-bulk RTs dataframes (chr,start,end,RT,group)
deltaRT_th,
min RT change for a region to be considered
CrossingRT,
IF true, only changes that are crossing the mid RT value will be considered
n_clusters,
number of clusters
colors,
min, midpoint and max colors
Value
list
CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.
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| RT_clustering | R Documentation |
Hclustering to identify RT signatures
Description
Hclustering to identify RT signatures
Usage
RT_clustering( ..., deltaRT_th = 0.1, CrossingRT = T, n_clusters = NULL, colors = NULL )
Arguments
..., |
bulk/pseudo-bulk RTs dataframes (chr,start,end,RT,group) |
deltaRT_th, |
min RT change for a region to be considered |
CrossingRT, |
IF true, only changes that are crossing the mid RT value will be considered |
n_clusters, |
number of clusters |
colors, |
min, midpoint and max colors |
Value
list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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