Prepare_S_phase_cells_forBinRepProb: Prepare S phase cells for BinRepProb plots

In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data

Prepare S phase cells for BinRepProb plots

Description

Prepare S phase cells for BinRepProb plots

Usage

Prepare_S_phase_cells_forBinRepProb(
  S,
  RT,
  Early.cells = c(0, 30),
  Mid.cells = c(40, 60),
  Late.cells = c(70, 100)
)

Arguments

S,	S single cell CNV dataframe
RT,	pseudobulk replication timing dataframe
Early.cells,	percentage of replication range defying Early replicating cells (0-100)
Mid.cells,	percentage of replication range defying Mid replicating cells (0-100)
Late.cells,	percentage of replication range defying Late replicating cells (0-100)

CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.