Plot_bulkRT: bulk RT plots of a region of interest

In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data

bulk RT plots of a region of interest

Description

bulk RT plots of a region of interest

Usage

Plot_bulkRT(
  ...,
  Coordinates = list(chr = "chr1", start = 0, end = Inf),
  plotting_groups = NULL,
  sample_colors = NULL,
  highlight_regions = NULL
)

Arguments

...,	one or multiple dataframes containing bulk and pseudo-bulk RTs and the following columns:chr, start, end, group, basename, RT
Coordinates,	named list containing chr,start and end position
plotting_groups,	optional: if provided samples can be plot together for comparison. It is a named list of arrays where the name is a sample basename if unique, otherwise basename - group, and the array contains the group(s) in which the sample has to be plot.
sample_colors,	a vector, named or not, for each sample. If multiple samples have the same name use "basename - group" otherwise only basename
highlight_regions,	optional: a list of arrays. each array contains start and end position of the region to highlight and optionally the color to use in third position

Value

plot

CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.